Serialized Form

Package brain
- Class brain.Brain extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
      Necessary for (de-)serialization in order to initialize transient fields.
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
      Necessary for (de-)serialization in order to initialize transient fields.
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - timeDelta
```
double timeDelta
```
      The time differential.
    - timeStepNumber
```
long timeStepNumber
```
      The number of time steps.
    - simulationSleepDelay
```
int simulationSleepDelay
```
      Delay specification for observation purposes.
    - modules
```
java.util.Set<E> modules
```
    - clusterActivityObserver
```
java.util.Set<E> clusterActivityObserver
```
      HashMap of `StatActiClus' for monitoring (global) clusters of activities centers.
    - clusterSearchTimeInterval
```
double clusterSearchTimeInterval
```
      Time interval for searching for active clusters. The default value for `clusterSearchTimeInterval' may be changed at run-time.
    - learnBiasObserver
```
java.util.Map<K,V> learnBiasObserver
```
      HashMap of `StatBiasLearn' for monitoring of learning of patterns presented to individual modules via the respective `bias[]'.
      The key is identical to the name of the module to be monitored.
      This observer is activated at the start of `*_IF.oneTimeStep()', when the bias has its nominal value (the `bias[]' is set to zero at the end of `*_IF.oneTimeStep()').
    - logInterval
```
double logInterval
```
- Class brain.ConstantSignalModule extends Module implements Serializable
  
  serialVersionUID:
  
  1L
- Class brain.DhanModule extends Module implements Serializable
  
  serialVersionUID:
  
  -8719357346526504937L
  - Serialized Fields
    - rates
```
double[] rates
```
      Array with the total growth-rates.
    - ratesInternal
```
double[] ratesInternal
```
      Array with the integral contribution to the growth-rates.
    - reservoir
```
double[] reservoir
```
      Array with the reservoirs.
    - afferentRates
```
double[] afferentRates
```
      Array with the input through the backward links, viz. the input received from other cognitiveSystems by active presynaptic neurons.
    - afferentInverseRates
```
double[] afferentInverseRates
```
      Array with the inverse input through the backward links, viz. the input received from other cognitiveSystems by inactive presynaptic neurons.
    - internalLinks
```
double[][][] internalLinks
```
      Matrix with the internal synaptic weights of the ACs. [0][.][.] : excitatory; long-term [1][.][.] : inhibitory [2][.][.] : excitatory; short-term
    - diffusiveModuleSignal
```
double diffusiveModuleSignal
```
      Has a large value when the current clique is activated due to the influence of the incoming signal due to the backward connections.
    - synchronizationStrength
```
double synchronizationStrength
```
      An effective measure (in [0,1]) of clique formation strength, interpreted as poor-man's synchronization.
    - defaultInhibitoryLinkStrength
```
double defaultInhibitoryLinkStrength
```
      Standard strength of inhibitory links
    - defaultExcitatoryLinkStrength
```
double defaultExcitatoryLinkStrength
```
      Standard strength of excitatory links
    - rateInhiWidth
```
double rateInhiWidth
```
      The total inhibitory contribution to the growth rates are normalized, with a width `rateInhiWidth' for the sigmoidal.
    - nResFunctions
```
int nResFunctions
```
      Number of different parameter sets for the reservoir functions.
    - phiXActive
```
double phiXActive
```
      The reservoir depletes when the activities is bigger than `phiXActive'.
    - phiXInactive
```
double phiXInactive
```
      The reservoir growths when the activities is smaller than `phiXInactive'.
    - phiGammaDown
```
double phiGammaDown
```
      Depletion-rate for the inhibitory reservoir.
    - phiGammaUp
```
double phiGammaUp
```
      Growth-rate for the inhibitory reservoir.
    - phiGammaCoh
```
double phiGammaCoh
```
      Averaging-rate for the inhibitory reservoirs of the winning clique.
    - phiCritical
```
double[] phiCritical
```
      Critical phi for the reservoir functionsf_w() and f_z() - public because used indirectly.
    - phiWidth
```
double[] phiWidth
```
      Width of the reservoir functions f_w() and f_z() - public because used indirectly.
    - phiMinValue
```
double[] phiMinValue
```
      Minimal value for the reservoir functions f_w() and f_z() - public because used indirectly.
    - shortTermMemGammaDown
```
double shortTermMemGammaDown
```
      Depletion-rate for short-term synaptic plasticity.
    - shortTermMemGammaUp
```
double shortTermMemGammaUp
```
      Activation-rate for short-term synaptic plasticity.
    - shortTermMemMaxStrength
```
double shortTermMemMaxStrength
```
      Maximal value for the short-term synaptic strength.
    - shortTermMemCriticalX
```
double shortTermMemCriticalX
```
      Critical activities strength for short-term memory to be activated.
    - shortTermMemMinExtBias
```
double shortTermMemMinExtBias
```
      Minimal external stimulus-strength for short-term memory to be activated.
    - longTermMemGammaOpt
```
double longTermMemGammaOpt
```
      Optimization-rate (long-term) for excitatory links
    - longTermMemMinStrength
```
double longTermMemMinStrength
```
      Mininal values for excitatory links
    - longTermMemOptRate
```
double longTermMemOptRate
```
      Optimal growth rate -- central parameter for the working-point optimization.
    - longTermMemCriticalX
```
double longTermMemCriticalX
```
      Critical presynaptic activities for long-term memory dynamics.
    - diffusiveModuleSignalRateUp
```
double diffusiveModuleSignalRateUp
```
      Activation rate for the diffusive module (learning) signal.
    - diffusiveModuleSignalRateDown
```
double diffusiveModuleSignalRateDown
```
      Deactivation rate for the diffusive module (learning) signal.
    - diffusiveModuleSignalCriticalValue
```
double diffusiveModuleSignalCriticalValue
```
      When above this critical value, the diffusive (learning) signal activates generalized Hebbian learning for the backward links.
    - diffusiveModuleSignalBackRateThreshold
```
double diffusiveModuleSignalBackRateThreshold
```
      When the backrate is above this threshold, the diffusive (learning) signal is activated.
    - backwardMemXActive
```
double backwardMemXActive
```
      Critical activities level for a module-neuron to be considered active.
    - backwardMemXInactive
```
double backwardMemXInactive
```
      Critical activities level for a module-neuron to be considered inactive.
    - backwardMemGammaActAct
```
double backwardMemGammaActAct
```
      Rate for active-to-active backward links to optimize.
    - backwardMemGammaInaAct
```
double backwardMemGammaInaAct
```
      Rate for inactive-to-active backward links to optimize.
    - backwardMemGammaActIna
```
double backwardMemGammaActIna
```
      Rate for active-to-inactive backward links to optimize.
    - backwardMemGammaInaIna
```
double backwardMemGammaInaIna
```
      Rate for inactive-to-inactive backward links to optimize.
    - backwardMemOptRateActAct
```
double backwardMemOptRateActAct
```
      Target growth-rate-input for active-to-active backward input.
    - backwardMemOptRateInaAct
```
double backwardMemOptRateInaAct
```
      Target growth-rate-input for inactive-to-active backward input.
    - backwardMemOptRateActIna
```
double backwardMemOptRateActIna
```
      Target growth-rate-input for active-to-inactive backward input.
    - backwardMemOptRateInaIna
```
double backwardMemOptRateInaIna
```
      Target growth-rate-input for inactive-to-inactive backward input.
    - backwardMemMean
```
double[] backwardMemMean
```
      The mean value of all backward links reaching a given site.
    - backwardMemStandDev
```
double[] backwardMemStandDev
```
      The standard deviation of all backward links reaching a given site.
    - ratesActive
```
double[] ratesActive
```
      Growth rates without f_w(phi) - internal variable.
      Without the influence of the postsynaptic reservoir. For use for the working-point optimization.
    - ratesPositive
```
double[] ratesPositive
```
      Positive contribution to the growth-rate - internal variable. Without the influence of the postsynaptic reservoir. For use for the working-point optimization.
    - ratesNegative
```
double[] ratesNegative
```
      Negative contribution to the growth-rate - internal variable. For use for the working-point optimization.
    - phiInverseWidth
```
double[] phiInverseWidth
```
      Inverse of the reservoir-function width - internal variable. For use for the reservoir functions.
    - phiAuxShift
```
double[] phiAuxShift
```
      Auxiliary variable for a fast evaluation of the reservoir function.
    - phiAuxFactor
```
double[] phiAuxFactor
```
      Auxiliary variable for a fast evaluation of the reservoir function.
    - auxInitialCliqueNumber
```
int auxInitialCliqueNumber
```
      The number of initial random clusters (all identical).
    - auxInitialCliqueSize
```
int auxInitialCliqueSize
```
      The size of initial random clusters (all identical).
    - auxAssInputFileNameAllowedValues
```
java.lang.String[] auxAssInputFileNameAllowedValues
```
      Determines the file names containing the associations.
- Class brain.LeakyIntegratorModule extends Module implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - leaks
```
java.util.List<E> leaks
```
    - membranePotentials
```
java.util.List<E> membranePotentials
```
    - silentInhibition
```
LeakyIntegratorModule.SilentInhibition silentInhibition
```
- Class brain.LeakyIntegratorWithIntrinsicPlasticityModule extends LeakyIntegratorModule implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - transferFunctionParameters
```
java.util.List<E> transferFunctionParameters
```
    - targetDistributionParameters
```
java.util.List<E> targetDistributionParameters
```
    - intrinsicPlasticity
```
boolean intrinsicPlasticity
```
    - intrinsicAdaptationLearningRates
```
java.util.List<E> intrinsicAdaptationLearningRates
```
    - transferFunctionParameterChanges
```
java.util.List<E> transferFunctionParameterChanges
```
    - transferFunctionType
```
int transferFunctionType
```
- Class brain.Module extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
      Necessary for (de-)serialization in order to initialize transient fields.
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
  - Serialized Fields
    - forwardModules
```
java.util.Map<K,V> forwardModules
```
      HashMap with string-identifiers and identifier of the receiving port of the target module.
      The geometry of the forward connection, specific to the `DhanModule' module. The receiving port (receptors for the neuromodulator) is given by the second argument of `forwardModules'.
    - afferentModules
```
java.util.Map<K,V> afferentModules
```
    - efferentModules
```
java.util.Set<E> efferentModules
```
    - activities
```
java.util.List<E> activities
```
      Array with the activities of the individual neurons.
    - biases
```
java.util.List<E> biases
```
      Array with the activities of the individual neurons.
    - links
```
java.util.List<E> links
```
      links to connect vertices
    - learningRates
```
java.util.List<E> learningRates
```
    - learningType
```
int learningType
```
    - receptors
```
java.util.HashMap<K,V> receptors
```
      HashMap with string-identifiers encoding the open ports for the individual receptors.
      The receptors are targeted by the diffusive module signals of other (or this) modules, via the respective forward connection, stored in the respective `forwardModules'.
      The allowed types of receptors, the cues of the HashMap, are stored in `auxMyReceptorsAllowedValues'.
    - cliques
```
java.util.Set<E> cliques
```
      The calculated cliques for this graph.
    - name
```
java.lang.String name
```
      Name of the module.
    - sortedIndices
```
java.lang.Integer[] sortedIndices
```
      Used for @see #getActiveClique(). Stores the last ordered indices. Useful if and only if sorting is stable (@see sorting algorithm stability).
    - isLearning
```
boolean isLearning
```
- Class brain.MyModule extends Module implements Serializable
  
  serialVersionUID:
  
  1L
- Class brain.NoiseModule extends Module implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - changeInterval
```
double changeInterval
```
    - lastChange
```
double lastChange
```
    - random
```
java.util.Random random
```
    - noise
```
int noise
```
- Class brain.PatternInputModule extends Module implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - name
```
java.lang.String name
```
      String-identifier for the module.
    - diffusiveModuleSignal
```
double diffusiveModuleSignal
```
      The diffusive signal specific to the input module, it's task yet to be determined.
    - remainingStimuli
```
java.util.SortedMap<K,V> remainingStimuli
```
      Dynamic LinkedList of `OneStimulus' with the external remainingStimuli - may be changed during run-time.
    - appliedStimuli
```
java.util.Set<E> appliedStimuli
```
      Set of `OneStimulus' which have been applied to PatternInputModule.
    - stimulusStartingTime
```
double stimulusStartingTime
```
      For the first stimulus.
    - stimulusDuration
```
double stimulusDuration
```
      Length of a stimulus.
    - timeBetweenStimuli
```
double timeBetweenStimuli
```
    - referencePatterns
```
java.util.ArrayList<E> referencePatterns
```
      Dynamic ArrayList of `OneStimulus' with the reference patterns.
Package brain.gui
- Class brain.gui.AccessibleObjectPreparationPanel extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - comboBox
```
javax.swing.JComboBox<E> comboBox
```
    - parameters
```
java.lang.Object[] parameters
```
    - parametersPanel
```
javax.swing.JPanel parametersPanel
```
- Class brain.gui.ActivityDistributionMatrixPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  -8741406332943868929L
  - Serialized Fields
    - allPoints
```
int[][] allPoints
```
    - dimX
```
int dimX
```
    - oldWidth
```
int oldWidth
```
    - oldHeigth
```
int oldHeigth
```
    - oldNeuronsNumber
```
int oldNeuronsNumber
```
    - dimY
```
int dimY
```
    - gradients
```
java.awt.Color[] gradients
```
    - activityDistribution
```
long[] activityDistribution
```
- Class brain.gui.ActivityMatrixPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  -8741406332943868929L
  - Serialized Fields
    - allPoints
```
int[][] allPoints
```
    - dimX
```
int dimX
```
    - oldWidth
```
int oldWidth
```
    - oldHeigth
```
int oldHeigth
```
    - oldNeuronsNumber
```
int oldNeuronsNumber
```
    - dimY
```
int dimY
```
    - gradients
```
java.awt.Color[] gradients
```
- Class brain.gui.BrainGUI extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - brain
```
Brain brain
```
      instance of the class which runs the simulation
    - brainThread
```
java.lang.Thread brainThread
```
    - moduleFrames
```
java.util.Map<K,V> moduleFrames
```
    - fileChooser
```
javax.swing.JFileChooser fileChooser
```
    - playPauseButton
```
javax.swing.JToggleButton playPauseButton
```
    - stopButton
```
javax.swing.JButton stopButton
```
    - removeModuleButton
```
javax.swing.JButton removeModuleButton
```
    - openModulesButton
```
javax.swing.JButton openModulesButton
```
    - list
```
javax.swing.JList<E> list
```
    - listModel
```
javax.swing.DefaultListModel<E> listModel
```
    - brainTablePanel
```
javax.swing.JScrollPane brainTablePanel
```
- Class brain.gui.FieldComparator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  139111378866077472L
- Class brain.gui.LinkMatrixPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  -8741406332943868929L
  - Serialized Fields
    - allPoints
```
int[][] allPoints
```
    - dimX
```
int dimX
```
    - oldWidth
```
int oldWidth
```
    - oldHeigth
```
int oldHeigth
```
    - oldNeuronsNumber
```
int oldNeuronsNumber
```
    - dimY
```
int dimY
```
    - gradients
```
java.awt.Color[] gradients
```
    - lowerBound
```
double lowerBound
```
    - upperBound
```
double upperBound
```
- Class brain.gui.MatrixViewPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  9091348126076117078L
  - Serialized Fields
    - dimX
```
int dimX
```
      width x axis
    - dimY
```
int dimY
```
      width y axis
    - lastTotalNumberOfNeurons
```
int lastTotalNumberOfNeurons
```
      number of neurons dimX and dimY have been calculated from
- Class brain.gui.ModuleFrame extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - module
```
Module module
```
    - table
```
ObjectTable table
```
    - parametersFile
```
java.io.File parametersFile
```
    - reloadParameterButton
```
javax.swing.JButton reloadParameterButton
```
    - processes
```
java.util.List<E> processes
```
    - childFrames
```
java.util.List<E> childFrames
```
- Class brain.gui.ModuleListCellRenderer extends javax.swing.DefaultListCellRenderer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - rendererComponent
```
javax.swing.JPanel rendererComponent
```
    - type
```
javax.swing.JLabel type
```
    - name
```
javax.swing.JLabel name
```
    - info
```
javax.swing.JLabel info
```
    - connections
```
javax.swing.JLabel connections
```
- Class brain.gui.ReceptiveFieldPaintPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - receptiveFieldCollecion
```
ReceptiveFieldCollection receptiveFieldCollecion
```
      contains all receptive fields
- Class brain.gui.ReceptiveFieldViewPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - zoomJSpinner
```
javax.swing.JSpinner zoomJSpinner
```
      Component for user action. Defines size of the smallest matrix element
    - spinnerColumns
```
javax.swing.JSpinner spinnerColumns
```
      Component for user action. Defines number of columns, when displaying receptive fields.
    - receptiveFieldCollecion
```
ReceptiveFieldCollection receptiveFieldCollecion
```
      Container for a receptive field of a clique
    - receptiveFieldPaintPanel
```
ReceptiveFieldPaintPanel receptiveFieldPaintPanel
```
      Graphical panel where receptive fields are drawn on
- Class brain.gui.ReferencePatternViewPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - zoomJSpinner
```
javax.swing.JSpinner zoomJSpinner
```
      Component for user action. Defines size of the smallest matrix element
    - spinnerColumns
```
javax.swing.JSpinner spinnerColumns
```
      Component for user action. Defines number of columns, when displaying receptive fields.
    - backlinks
```
java.util.ArrayList<E> backlinks
```
      Holds backlinks
    - receptiveFieldCollecion
```
ReceptiveFieldCollection receptiveFieldCollecion
```
      Container for a receptive field of a clique
    - receptiveFieldPaintPanel
```
ReceptiveFieldPaintPanel receptiveFieldPaintPanel
```
      Graphical panel where receptive fields are drawn on
    - inputValue
```
java.lang.String inputValue
```
      File path where backlinks are read from
- Class brain.gui.SystemView extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - module
```
Module module
```
    - title
```
java.lang.String title
```
    - tabbedPane
```
javax.swing.JTabbedPane tabbedPane
```
    - methodName
```
java.lang.String methodName
```
- Class brain.gui.SystemViewPanel extends ViewPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - criticalActivation
```
double criticalActivation
```
      critical activities indicates when a site is considered active or inactive. Below that value it is defined inactive, above that value is is considered active
    - labelRadiusDelta
```
double labelRadiusDelta
```
      The label sites are drawn on their own circle. And thats the difference between the site circle and the label circle
    - showExcitatory
```
boolean showExcitatory
```
      Switch for showing internal excitatory links or not
- Class brain.gui.ViewPanel extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - module
```
Module module
```
      the object instance which implements Module
    - methodName
```
java.lang.String methodName
```
      method name to call to get data which is subject to display
    - accessField
```
java.lang.reflect.Field accessField
```
      Field representing a variable of an object which value one might read via Field.get(Object o)
      
      See Also:
      Field.get(Object)
    - usePublicField
```
boolean usePublicField
```
      Prefer access via Field.get(Object o) over calling a getter-method
    - title
```
java.lang.String title
```
      Title of the parent frame
Package brain.gui.chart
- Class brain.gui.chart.Chart extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - object
```
java.lang.Object object
```
      Module instance of Module, which happens to be accessed via Reflection API by mehtodName every time observable notifies this object
    - fieldX
```
java.lang.reflect.Field fieldX
```
      The field which gets accessed if usePublicField is true
    - fieldY
```
java.lang.reflect.Field fieldY
```
    - chart
```
java.awt.Component chart
```
    - lastRepaintTime
```
double lastRepaintTime
```
    - repaintInterval
```
double repaintInterval
```
- Class brain.gui.chart.ChartFrame extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - charts
```
java.util.Vector<E> charts
```
    - graphPanel
```
javax.swing.JPanel graphPanel
```
- Class brain.gui.chart.JChart2D extends Chart implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - traces
```
java.util.Vector<E> traces
```
- Class brain.gui.chart.JFreeChart extends Chart implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - traces
```
org.jfree.data.xy.XYSeriesCollection traces
```
    - lastRepaint
```
long lastRepaint
```
    - repaintInterval
```
long repaintInterval
```
Package brain.gui.table
- Class brain.gui.table.AccessibleObjectTableCellEditor extends javax.swing.DefaultCellEditor implements Serializable
  
  serialVersionUID:
  
  1L
- Class brain.gui.table.AccessibleObjectTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - colors
```
java.util.Map<K,V> colors
```
- Class brain.gui.table.BooleanTableCellEditor extends javax.swing.AbstractCellEditor implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - toggleButton
```
javax.swing.JToggleButton toggleButton
```
- Class brain.gui.table.BooleanTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - toggleButton
```
javax.swing.JToggleButton toggleButton
```
- Class brain.gui.table.ObjectTable extends javax.swing.JTable implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - charts
```
java.util.Map<K,V> charts
```
    - chartFrame
```
ChartFrame chartFrame
```
    - printInterval
```
double printInterval
```
    - lastMessage
```
java.util.Date lastMessage
```
    - object
```
java.lang.Object object
```
    - objectTableModel
```
ObjectTableModel objectTableModel
```
- Class brain.gui.table.ObjectTableModel extends javax.swing.table.DefaultTableModel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - object
```
java.lang.Object object
```
- Class brain.gui.table.TypeTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable
  
  serialVersionUID:
  
  1L
Package utils
- Class utils.Interval extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1217404228388126357L
  - Serialized Fields
    - start
```
double start
```
    - end
```
double end
```
    - comparatorMode
```
int comparatorMode
```

Serialized Form

Package brain

Class brain.Brain extends java.lang.Object implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

timeDelta

timeStepNumber

simulationSleepDelay

modules

clusterActivityObserver

clusterSearchTimeInterval

learnBiasObserver

logInterval

Class brain.ConstantSignalModule extends Module implements Serializable

Class brain.DhanModule extends Module implements Serializable

Serialized Fields

rates

ratesInternal

reservoir

afferentRates

afferentInverseRates

internalLinks

diffusiveModuleSignal

synchronizationStrength

defaultInhibitoryLinkStrength

defaultExcitatoryLinkStrength

rateInhiWidth

nResFunctions

phiXActive

phiXInactive

phiGammaDown

phiGammaUp

phiGammaCoh

phiCritical

phiWidth

phiMinValue

shortTermMemGammaDown

shortTermMemGammaUp

shortTermMemMaxStrength

shortTermMemCriticalX

shortTermMemMinExtBias

longTermMemGammaOpt

longTermMemMinStrength

longTermMemOptRate

longTermMemCriticalX

diffusiveModuleSignalRateUp

diffusiveModuleSignalRateDown

diffusiveModuleSignalCriticalValue

diffusiveModuleSignalBackRateThreshold

backwardMemXActive

backwardMemXInactive

backwardMemGammaActAct

backwardMemGammaInaAct

backwardMemGammaActIna

backwardMemGammaInaIna

backwardMemOptRateActAct

backwardMemOptRateInaAct

backwardMemOptRateActIna

backwardMemOptRateInaIna

backwardMemMean

backwardMemStandDev

ratesActive

ratesPositive

ratesNegative

phiInverseWidth

phiAuxShift

phiAuxFactor

auxInitialCliqueNumber

auxInitialCliqueSize

auxAssInputFileNameAllowedValues

Class brain.LeakyIntegratorModule extends Module implements Serializable

Serialized Fields

leaks

membranePotentials

silentInhibition

Class brain.LeakyIntegratorWithIntrinsicPlasticityModule extends LeakyIntegratorModule implements Serializable

Serialized Fields

transferFunctionParameters